Publications (PURE)

Publications

Recent publications listed in research@st-andrews

Vellend, M, Dornelas, M, Baeten, L, Beauséjour, R, Brown, CD, De Frenne, P, Elmendorf, SC, Gotelli, NJ, Moyes, F, Myers-Smith, IH, Magurran, AE, McGill, BJ, Shimadzu, H & Sievers, C 2017, 'Estimates of local biodiversity change over time stand up to scrutiny' Ecology, vol 98, no. 2, pp. 583-590. DOI: 10.1002/ecy.1660
Jaramillo-Legorreta, A, Cardenas-Hinojosa, G, Nieto-Garcia, E, Rojas-Bracho, L, Hoef, JV, Moore, J, Tregenza, N, Barlow, J, Gerrodette, T, Thomas, L & Taylor, B 2017, 'Passive acoustic monitoring of the decline of Mexico's critically endangered vaquita' Conservation Biology, vol 31, no. 1, pp. 183-191. DOI: 10.1111/cobi.12789
Chen, F, Shapiro, GI, Bennett, KA, Ingram, SN, Thompson, D, Vincent, C, Russell, DJF & Embling, CB 2017, 'Shipping noise in a dynamic sea: a case study of grey seals in the Celtic Sea' Marine Pollution Bulletin, vol 114, no. 1, pp. 372-383. DOI: 10.1016/j.marpolbul.2016.09.054
Hampton, SE, Halpern, BS, Winter, M, Balch, JK, Parker, JN, Baron, JS, Palmer, M, Schildhauer, MP, Bishop, P, Meagher, TR & Specht, A 2017, 'Best practices for virtual participation in meetings: experiences from synthesis centers' The Bulletin of the Ecological Society of America, vol 98, no. 1, pp. 57-63. DOI: 10.1002/bes2.1290
Jones, EL & Russell, DJ 2017, Updated grey seal (Halichoerus grypus) usage maps in the North Sea. vol. OESEA-15-65, Department of Energy and Climate Change.
Savage, A, Thomas, L, Feilen, KL, Kidney, D, Soto, LH, Pearson, M, Medina, FS, Emeris, G & Guillen, RR 2016, 'An assessment of the population of cotton-top tamarins (Saguinus oedipus) and their habitat in Colombia' PLoS One, vol 11, no. 12, e0168324. DOI: 10.1371/journal.pone.0168324
Taylor, BL, Rojas-Bracho, L, Moore, J, Jaramillo-Legorreta, A, Ver Hoef, JM, Cardenas-Hinojosa, G, Nieto-Garcia, E, Barlow, J, Gerrodette, T, Tregenza, N, Thomas, L & Hammond, PS 2016, 'Extinction is imminent for Mexico’s endemic porpoise unless fishery bycatch is eliminated' Conservation Letters, vol Early View. DOI: 10.1111/conl.12331
Schick, RS, Humphris, GM, Kelsey, TW, Marston, J & Sampson, K 2016, 'MapMySmoke–a context aware mobile phone application targeted at smoking cessation' Scottish Smoking Cessation Conference 2016, Edinburgh, United Kingdom, 22/11/16 - 22/11/16, . DOI: 10.13140/RG.2.2.27703.32165
Heide-Jørgensen, MP, Hansen, RG, Fossette, S, Nielsen, NH, Borchers, DL, Stern, H & Witting, L 2016, 'Rebuilding beluga stocks in West Greenland' Animal Conservation, vol Early View. DOI: 10.1111/acv.12315
Ledo, A, Illian, JB, Schnitzer, SA, Wright, SJ, Dalling, JW & Burslem, DFRP 2016, 'Lianas and soil nutrients predict fine-scale distribution of above-ground biomass in a tropical moist forest' Journal of Ecology, vol 104, no. 6, pp. 1819-1828. DOI: 10.1111/1365-2745.12635
Dellabianca, NA, Pierce, GJ, Rey, AR, Scioscia, G, Miller, DL, Torres, MA, Viola, MNP, Goodall, RNP & Schiavini, ACM 2016, 'Spatial models of abundance and habitat preferences of Commerson’s and Peale’s dolphin in southern Patagonian waters' PLoS One, vol 11, no. 10, e0163441. DOI: 10.1371/journal.pone.0163441
Python, A, Illian, JB, Jones-Todd, CM & Blangiardo, M 2016, Explaining the Lethality of Boko Haram’s Terrorist Attacks in Nigeria, 2009-2014: A Hierarchical Bayesian Approach. in R Argiento, E Lanzarone, I Antoniano Villalobos & A Mattei (eds), Bayesian statistics in action: Proceedings of BAYSM 2016 . Springer Proceedings in Mathematics & Statistics, vol. 194, Springer.
Tyack, PL, Bailey, H, Crocker, D, Estes, JE, Francis, CD, Harwood, J, Schwacke, L, Thomas, LJ & Wartzok, D 2016, Approaches to Understanding the Cumulative Effects of Stressors on Marine Mammals. National Academies Press, Washington DC. National Academies Press, Washington DC. DOI: 10.17226/23479
Arranz Alonso, P, DeRuiter, SL, Stimpert, AK, Neves, S, Friedlaender, AS, Goldbogen, JA, Visser, F, Calambokidis, J, Southall, BL & Tyack, PL 2016, 'Discrimination of fast click series produced by tagged Risso’s dolphins (Grampus griseus) for echolocation or communication' Journal of Experimental Biology, vol 219, no. 18, pp. 2898-2907. DOI: 10.1242/jeb.144295
Vogogias, A, Kennedy, J, Archaumbault, D, Smith, VA & Currant, H 2016, MLCut: exploring Multi-Level Cuts in dendrograms for biological data. in C Turkay & TR Wan (eds), Computer Graphics and Visual Computing Conference (CGVC) 2016. Eurographics Association, Computer Graphics & Visual Computing (CGVC) 2016, Bournemouth, United Kingdom, 15-16 September. DOI: 10.2312/cgvc.20161288
Metcalfe, K, Collins, T, Abernethy, KE, Boumba, R, Dengui, J-C, Miyalou, R, Parnell, RJ, Plummer, KE, Russell, DJF, Safou, GK, Tilley, D, Turner, RA, VanLeeuwe, H, Witt, MJ & Godley, BJ 2016, 'Addressing uncertainty in marine resource management; combining community engagement and tracking technology to characterise human behavior' Conservation Letters, vol Early View. DOI: 10.1111/conl.12293
Russell, DJF 2016, Activity Budgets:Analysis of seal behaviour at sea. Department for Business, Energy and Industrial Strategy.
Pimentel, MS, Faleiro, F, Marques, T, Bispo, R, Dionísio, G, Faria, AM, Machado, J, Peck, MA, Pörtner, H, Pousão-Ferreira, P, Gonçalves, EJ & Rosa, R 2016, 'Foraging behaviour, swimming performance and malformations of early stages of commercially important fishes under ocean acidification and warming' Climatic Change, vol 137, no. 3, pp. 495-509. DOI: 10.1007/s10584-016-1682-5
Kempf, A, Mumford, J, Levontin, P, Leach, A, Hoff, A, Hamon, KG, Bartelings, H, Vinther, M, Staebler, M, Poos, JJ, Smout, S, Frost, H, van den Burg, S, Ulrich, C & Rindorf, A 2016, 'The MSY concept in a multi-objective fisheries environment - Lessons from the North Sea' Marine Policy, vol 69, pp. 146-158. DOI: 10.1016/j.marpol.2016.04.012
Fleishman, E, Costa, DP, Harwood, J, Kraus, S, Moretti, D, New, LF, Schick, RS, Schwarz, LK, Simmons, SE, Thomas, L & Wells, RS 2016, 'Monitoring population-level responses of marine mammals to human activities' Marine Mammal Science, vol 32, no. 3, pp. 1004-1021. DOI: 10.1111/mms.12310
Ellison, WT, Racca, R, Clark, CW, Streever, B, Frankel, AS, Fleishman, E, Angliss, R, Berger, J, Ketten, D, Guerra, M, Leu, M, McKenna, M, Sformo, T, Southall, B, Suydam, R & Thomas, L 2016, 'Modeling the aggregated exposure and responses of bowhead whales Balaena mysticetus to multiple sources of anthropogenic underwater sound' Endangered Species Research, vol 30, pp. 95-108. DOI: 10.3354/esr00727
Moffat, C, Buckland, ST, Samson, AJ, McArthur, R, Chamosa Pino, V, Bollan, KA, Huang, JT-J & Connolly, CN 2016, 'Neonicotinoids target distinct nicotinic acetylcholine receptors and neurons, leading to differential risks to bumblebees' Scientific Reports, vol 6, 24764, pp. 1-10. DOI: 10.1038/srep24764
Rue, H, Riebler, A, Sørbye, SH, Illian, JB, Simpson, DP & Lindgren, FK 2017, 'Bayesian computing with INLA: a Review' Annual Review of Statistics and its Application, vol 4.
Letessier, TB, Cox, MJ, Meeuwig, JJ, Boersch-Supan, PH & Brierley, AS 2016, 'Enhanced pelagic biomass around coral atolls' Marine Ecology Progress Series, vol 546, pp. 271-276. DOI: 10.3354/meps11675
Simpson, D, Illian, JB, Lindgren, F, Sørbye , SH & Rue, H 2016, 'Going off grid: computationally efficient inference for log-Gaussian Cox processes' Biometrika, vol 103, no. 1, pp. 49-70. DOI: 10.1093/biomet/asv064
Magurran, AE 2016, 'How ecosystems change' Science, vol 351, no. 6272, pp. 448-449. DOI: 10.1126/science.aad6758
Brierley, AS & Clapham, P 2016, 'Japan's whaling is unscientific' Nature, vol 529, no. 7586, pp. 283-283.
Russell, DJF 2016, Movements of Grey Seal That Haul out on the UK Coast of the Southern North Sea. vol. OESEA - 14 - 47 , Department of Energy and Climate Change.
Graham, IM, Cheney, B, Hewitt, R, Cordes, L, Hastie, GD, Russell, DJF, Arso Civil, M, Hammond, PS & Thompson, P 2016, Strategic Regional Pre-construction Marine Mammal Monitoring Programme Annual Report 2016. Annual report for the Moray Firth Regional Advisory Group, University of Aberdeen.
Gonzalvo, J, Lauriano, G, Hammond, PS, Viaud-Martinez, KA, Fossi, MC, Natoli, A & Marsili, L 2016, The Gulf of Ambracia’s common bottlenose dolphins (Tursiops truncatus): a highly dense and yet threatened population. in G Notarbartolo di Sciara, M Podestà & BE Curry (eds), Mediterranean Marine Mammal Ecology and Conservation. 1st edn, Advances in Marine Biology, vol. 75, Academic Press/Elsevier . DOI: 10.1016/bs.amb.2016.07.002
Aderhold, A, Smith, VA & Husmeier, D 2016, Biological network inference at multiple scales: from gene regulation to species interactions. in M Elloumi, CS Iliopoulos, JTL Wang & AY Zomaya (eds), Pattern Recognition in Computational Molecular Biology: Techniques and Approaches. Wiley Book Series on Bioinformatics: Computational Techniques and Engineering, Wiley-Blackwell, pp. 525-554.
Harris, CM, Thomas, L, Sadykova, D, De Ruiter, SL, Tyack, PL, Southall, BL, Read, AJ & Miller, P 2016, The challenges of analyzing behavioral response study data: an overview of the MOCHA (Multi-study OCean acoustics Human effects Analysis) project. in AN Popper & A Hawkins (eds), Effects of Noise on Aquatic Life II. Advances in Experimental Medicine and Biology, vol. 875, Springer Science and Business Media, pp. 399-407, Third International Conference on the Effects of Noise on Aquatic Life, Budapest, Hungary, 11-16 August. DOI: 10.1007/978-1-4939-2981-8_47
Hildebrand, J, Baumann-Pickering, S, Frasier, K, Trickey, J, Merkens, K, Wiggins, S, McDonald, M, Garrison, L, Harris, D, Marques, TA & Thomas, L 2015, 'Passive acoustic monitoring of beaked whale densities in the Gulf of Mexico' Scientific Reports, vol 5, 16343. DOI: 10.1038/srep16343
Marques, TA & Thomas, L 2015, A description of LATTE outputs. CREEM Technical Report, no. 2015-2, University of St Andrews.
Williams, R, Wright, AJ, Ashe, E, Blight, LK, Bruintjes, R, Canessa, R, Clark, CW, Cullis-Suzuki, S, Dakin, DT, Erbe, C, Hammond, PS, Merchant, MD, O'Hara, PD, Purser, J, Radford, AN, Simpson, SD, Thomas, L & Wale, MA 2015, 'Impacts of anthropogenic noise on marine life: publication patterns, new discoveries, and future directions in research and management' Ocean and Coastal Management, vol 115, pp. 17-24. DOI: 10.1016/j.ocecoaman.2015.05.021
New, LF, Hall, AJ, Harcourt, R, Kaufman, G, Parsons, ECM, Pearson, HC, Cosentino, AM & Schick, RS 2015, 'The modelling and assessment of whale-watching impacts' Ocean and Coastal Management, vol 115, pp. 10-16. DOI: 10.1016/j.ocecoaman.2015.04.006
Brummitt, N, Bachman, S, Griffiths-Lee, J, Lutz, M, Moat, J, Farjon, A, Donaldson, J, Hilton-Taylor, C, Meagher, TR, Albuquerque, S, Aletrari, E, Andrews, AK, Atchison, G, Baloch, E, Barlozzini, B, Brunazzi, A, Carretero, J, Celesti, M, Chadburn, H, Ciafoni, E, Cockel, C, Coldwell, V, Concetti, B, Contu, S, Crook, V, Dyson, P, Gardiner, L, Ghanim, N, Greene, H, Groom, A, Harker, R, Hopkins, D, Khela, S, Lakeman-Fraser, P, Lindon, H, Lockwood, H, Loftu, C, Lombrici, D, Lopez-Poveda, L, Lyon, J, Malcolm-Tompkins, P, McGregor, K, Moreno, L, Murray, L, Nazar, K & Nic Lughadha, E 2015, 'Green plants in the red: a baseline global assessment for the IUCN Sampled Red List Index for Plants' PLoS One, vol 10, no. 8, e0135152. DOI: 10.1371/journal.pone.0135152
Webster, CN, Hansson, S, Didrikas, T, Gorokhova, E, Peltonen, H, Brierley, AS & Lehtiniemi, M 2015, 'Stuck between a rock and a hard place: zooplankton vertical distribution and hypoxia in the Gulf of Finland, Baltic Sea' Marine Biology, vol 162, no. 7, pp. 1429-1440. DOI: 10.1007/s00227-015-2679-8
Pocock, MJO, Newson, SE, Henderson, IG, Peyton, J, Sutherland, WJ, Noble, DG, Ball, SG, Beckmann, BC, Biggs, J, Brereton, T, Bullock, DJ, Buckland, ST, Edwards, M, Eaton, MA, Harvey, MC, Hill, MO, Horlock, M, Hubble, DS, Julian, AM, Mackey, EC, Mann, DJ, Marshall, MJ, Medlock, JM, O'Mahony, EM, Pacheco, M, Porter, K, Prentice, S, Procter, DA, Roy, HE, Southway, SE, Shortall, CR, Stewart, AJA, Wembridge, DE, Wright, MA & Roy, DB 2015, 'Developing and enhancing biodiversity monitoring programmes: a collaborative assessment of priorities' Journal of Applied Ecology, vol 52, no. 3, pp. 686-695. DOI: 10.1111/1365-2664.12423
Moffat, C, Goncalves Pacheco, J, Sharpe, S, Samson, AJ, Bollan, KA, Huang, J, Buckland, ST & Connolly, CN 2015, 'Chronic exposure to imidacloprid increases neuronal vulnerability to mitochondrial dysfunction in the bumblebee (Bombus terrestris)' FASEB Journal, vol 29, no. 5, pp. 2112-2119. DOI: 10.1096/fj.14-267179
Caillat, MAA & Smout, SC 2015, CSD4: Harbour Seal Decline: Population Modelling. in Report to Marine Scotland MMSS/001/11.
Vikingsson, GA, Pike, DG, Valdimarsson, H, Schleimer, A, Gunnlaugsson, T, Silva, T, Elvarsson, BÞ, Mikkelsen, B, Øien, N, Desportes, G, Bogason, V & Hammond, PS 2015, 'Distribution, abundance, and feeding ecology of baleen whales in Icelandic waters: have recent environmental changes had an effect?' Frontiers in Ecology and Evolution, vol 3, 6. DOI: 10.3389/fevo.2015.00006
Russell, DJF, Wanless, S, Collingham, Y, Anderson, B, Beale, C, Reid, J, Huntley, B & Hamer, K 2015, 'Beyond climate envelopes: bio-climate modelling accords with observed 25-year changes in seabird populations of the British Isles' Diversity and Distributions, vol 21, no. 2, pp. 211-222. DOI: 10.1111/ddi.12272
Rekdal, SL, Hansen, RG, Borchers, D, Bachmann, L, Laidre, KL, Wiig, O, Nielsen, NH, Fossette, S, Tervo, O & Heide-Jørgensen, MP 2015, 'Trends in bowhead whales in West Greenland: aerial surveys vs. genetic capture-recapture analyses' Marine Mammal Science, vol 31, no. 1, pp. 133-154. DOI: 10.1111/mms.12150
Urian, K, Gorgone, A, Read, AJ, Balmer, B, Wells, RS, Berggren, P, Durban, JW, Eguchi, T, Rayment, W & Hammond, PS 2015, 'Recommendations for photo-identification methods used in capture-recapture models with cetaceans' Marine Mammal Science, vol 31, no. 1, pp. 298–321. DOI: 10.1111/mms.12141
Laplanche, C, Marques, TALO & Thomas, LJ, Accompanying Marine Mammals into the Abyss: The Benefits of Electronic Tag Data for Undersea Tracking, 2015, Web publication/site, Blog post on the Official blog of Methods in Ecology and Evolution.
Marques, TA, Shaeffer, J, Moretti, D & Thomas, L 2015, Procedure description: using AUTEC’s hydrophones surrounding a DTAGed whale to obtain localizations. CREEM Technical Report, no. 2015-1, University of St Andrews.
Gimenez, O, Buckland, ST, Morgan, BJT, Bez, N, Bertrand, S, Choquet, R, Dray, S, Etienne, M-P, Fewster, R, Gosselin, F, Merigot, B, Monestiez, P, Morales, JM, Mortier, F, Munoz, F, Ovaskainen, O, Pavoine, S, Pradel, R, Schurr, FM, Thomas, L, Thuiller, W, Trenkel, V, de Valpine, P & Rexstad, E 2014, 'Statistical ecology comes of age' Biology Letters, vol 10, 20140698. DOI: 10.1098/rsbl.2014.0698
Marques, TA, Buckland, ST, Borchers, DL, Rexstad, E & Thomas, L 2014, Distance Sampling. in M Lovric (ed.), International Encyclopedia of Statistical Science. Springer, pp. 398. DOI: 10.1007/978-3-642-04898-2_214